STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1268PFAM: protein of unknown function DUF411; KEGG: mpt:Mpe_A0494 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Lcho_1267
PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 predicted multicopper oxidase.
 
  
 0.891
Lcho_1266
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal.
 
     0.750
Lcho_1265
PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A1633 putative copper resistance-related lipoprotein.
       0.683
Lcho_1264
KEGG: mpt:Mpe_A1632 multi-Cu oxidase.
       0.631
Lcho_1835
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mpt:Mpe_A1640 P1 ATPase/HMA domain.
 
   
 0.475
Lcho_0148
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase.
 
   
 0.454
Lcho_1263
KEGG: mpt:Mpe_A1631 hypothetical protein.
       0.430
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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