STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1306KEGG: mpt:Mpe_A3543 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Lcho_1304
KEGG: mpt:Mpe_A3545 hypothetical protein.
 
     0.839
Lcho_1305
KEGG: mpt:Mpe_A3544 hypothetical protein.
 
     0.827
Lcho_2702
PFAM: protein of unknown function DUF339; KEGG: mpt:Mpe_A2166 hypothetical protein.
  
     0.723
Lcho_0354
PFAM: branched-chain amino acid transport; KEGG: ajs:Ajs_4055 branched-chain amino acid transport.
 
     0.681
Lcho_1767
PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A2772 putative hydrolase protein.
  
     0.669
purU-2
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.661
Lcho_3826
KEGG: mpt:Mpe_A3175 hypothetical protein.
  
     0.645
Lcho_3533
KEGG: mpt:Mpe_A0190 putative ATP synthase protein I AtpI.
  
     0.638
Lcho_2808
KEGG: mpt:Mpe_A1280 hypothetical protein.
  
     0.617
Lcho_3579
KEGG: mpt:Mpe_A2078 hypothetical protein.
  
     0.614
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.