STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1313KEGG: vvy:VV1909 hypothetical protein. (404 aa)    
Predicted Functional Partners:
Lcho_1314
KEGG: vei:Veis_3011 hypothetical protein.
       0.757
Lcho_1310
PFAM: N-6 DNA methylase; KEGG: ajs:Ajs_2616 N-6 DNA methylase.
       0.651
Lcho_1311
PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_1015 restriction modification system DNA specificity domain.
       0.648
Lcho_1312
Hypothetical protein.
       0.648
Lcho_1309
PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: ajs:Ajs_2618 EcoEI R, C-terminal domain protein.
       0.569
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.