STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1336Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: csa:Csal_0345 transcriptional regulator, GntR family. (246 aa)    
Predicted Functional Partners:
Lcho_2698
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pna:Pnap_2384 transcriptional regulator, GntR family.
  
     0.769
Lcho_0081
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A2899 putative GntR-family transcription regulator.
  
     0.762
Lcho_3365
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ajs:Ajs_0204 transcriptional regulator, GntR family.
  
     0.736
Lcho_1335
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bvi:Bcep1808_3498 vanillate monooxygenase.
 
   
 0.716
Lcho_1116
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A0971 regulatory protein, GntR.
 
  
 0.694
Lcho_1334
Phthalate 4,5-dioxygenase; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pna:Pnap_2724 ferredoxin.
 
   
 0.632
Lcho_1333
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: azo:azo3677 putative C4-dicarboxylate-binding periplasmic protein.
 
     0.499
Lcho_1337
PFAM: cytochrome c class I; KEGG: rfr:Rfer_4077 cytochrome c, class I.
       0.419
Lcho_1332
KEGG: psa:PST_1663 hypothetical protein.
 
     0.414
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.