STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1337PFAM: cytochrome c class I; KEGG: rfr:Rfer_4077 cytochrome c, class I. (116 aa)    
Predicted Functional Partners:
Lcho_1576
KEGG: mpt:Mpe_A3735 cytochrome c-551 precursor.
  
  
  0.952
Lcho_1488
PFAM: cytochrome c class I; KEGG: pol:Bpro_2050 cytochrome c, class I.
  
  
 
0.918
Lcho_2364
PFAM: Cache type 2 domain protein; KEGG: rpe:RPE_1803 cache, type 2.
     
  0.900
Lcho_1338
PFAM: NapC/NirT cytochrome c domain protein; KEGG: bpt:Bpet4055 cytochrome c-type protein.
     
 0.687
Lcho_0966
KEGG: mpt:Mpe_A2246 hypothetical protein.
  
     0.686
Lcho_3370
PFAM: Rieske [2Fe-2S] domain protein; KEGG: aav:Aave_2012 Rieske (2Fe-2S) domain protein.
  
     0.639
Lcho_1443
KEGG: ajs:Ajs_1911 hypothetical protein.
  
  
 0.552
cobD
Putative cobalamin biosynthesis transmembrane protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
     0.522
Lcho_2618
Hypothetical protein; KEGG: rso:RSc2304 putative proline rich transmembrane protein.
  
     0.511
Lcho_0667
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: mpt:Mpe_A1128 putative oxidoreductase protein.
  
     0.500
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.