STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1387PFAM: Methyltransferase type 11; KEGG: rpd:RPD_3889 methyltransferase type 11. (223 aa)    
Predicted Functional Partners:
Lcho_1388
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4265 glycosyl transferase, family 2.
       0.778
Lcho_1386
KEGG: aeh:Mlg_0113 hypothetical protein.
 
     0.776
Lcho_1391
KEGG: pgi:PG0114 hypothetical protein.
       0.773
Lcho_1390
PFAM: glycosyl transferase family 2; KEGG: sfu:Sfum_0967 glycosyl transferase, family 2.
       0.771
Lcho_1389
KEGG: hau:Haur_3584 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase.
       0.762
Lcho_1392
PFAM: polysaccharide biosynthesis protein; protein of unknown function DUF354; KEGG: smd:Smed_4810 polysaccharide biosynthesis protein.
       0.762
Lcho_1393
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_CH01368 probable aminotransferase protein (involved in cell wall biogenesis); Belongs to the DegT/DnrJ/EryC1 family.
  
    0.743
Lcho_1394
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: art:Arth_4059 NAD-dependent epimerase/dehydratase.
       0.731
Lcho_1383
PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4802 glycosyl transferase family 2.
       0.690
Lcho_1384
KEGG: nar:Saro_3228 hypothetical protein.
       0.686
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.