STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1402Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rso:RSc0292 response regulator transcription regulator protein. (211 aa)    
Predicted Functional Partners:
Lcho_1401
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: dar:Daro_1573 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, dimerization and phosphoacceptor region.
 
 0.964
Lcho_4371
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_3093 integral membrane sensor signal transduction histidine kinase.
   
  0.913
Lcho_0902
KEGG: reh:H16_A1985 signal transduction histidine kinase containing PAS/PAC sensor domain; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.859
Lcho_2419
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4297 PAS/PAC sensor signal transduction histidine kinase.
 
 0.849
Lcho_1633
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: bbr:BB2739 probable two-component sensor histidine kinase.
 
 
 0.843
Lcho_3849
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mpt:Mpe_A2604 signal transduction histidine kinase glucose-6-phosphate-like protein.
 
 
 0.841
Lcho_3951
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: mpt:Mpe_A3238 signal transduction histidine kinase-like protein.
 
 
 0.833
Lcho_4069
PAS/PAC sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.826
Lcho_0243
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mpt:Mpe_A3044 methanol utilization control sensor protein MoxY, putative.
 
 
 0.813
Lcho_1596
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: mpt:Mpe_A0582 signal transduction histidine kinase-like protein.
 
 
 0.806
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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