STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1413TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Lcho_1416
KEGG: pna:Pnap_1586 hypothetical protein.
 
    0.968
Lcho_1404
TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: bvi:Bcep1808_5994 nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.942
Lcho_1409
PFAM: NifZ family protein; KEGG: bxe:Bxe_B1450 hypothetical protein.
 
  
 0.937
Lcho_1410
KEGG: mca:MCA0210 NifZ protein, putative.
 
     0.912
Lcho_1408
PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bxe:Bxe_B1449 hypothetical protein.
 
    0.911
Lcho_1411
KEGG: bxe:Bxe_B1452 hypothetical protein.
 
     0.894
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.877
Lcho_1407
KEGG: pna:Pnap_1577 hypothetical protein.
 
     0.857
Lcho_1352
TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: bxe:Bxe_B1473 hypothetical protein.
 
    0.855
Lcho_1351
TIGRFAM: nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: bbt:BBta_5920 nitrogenase molybdenum-iron protein NifX.
 
  
 0.842
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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