STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1417PFAM: ferredoxin; KEGG: bbt:BBta_5894 putative ferredoxin, 2Fe-2S. (101 aa)    
Predicted Functional Partners:
Lcho_1410
KEGG: mca:MCA0210 NifZ protein, putative.
 
     0.878
Lcho_3661
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_2942 oxidoreductase FAD/NAD(P)-binding domain protein.
  
 
 0.871
Lcho_1416
KEGG: pna:Pnap_1586 hypothetical protein.
 
    0.863
Lcho_1411
KEGG: bxe:Bxe_B1452 hypothetical protein.
 
     0.848
Lcho_1408
PFAM: leucine rich repeat variant; LRV FeS4 cluster domain protein; KEGG: bxe:Bxe_B1449 hypothetical protein.
 
     0.818
Lcho_1407
KEGG: pna:Pnap_1577 hypothetical protein.
 
    0.814
Lcho_1413
TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: mca:MCA0213 hypothetical protein.
 
    0.814
Lcho_1412
PFAM: aminotransferase class V; KEGG: bvi:Bcep1808_6002 aminotransferase, class V.
  
 0.813
Lcho_1462
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
  
 
 0.808
Lcho_1406
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: bxe:Bxe_B1447 HesB/YadR/YfhF; Belongs to the HesB/IscA family.
 
 
 0.765
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.