STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1459PFAM: nickel-dependent hydrogenase large subunit; KEGG: bxe:Bxe_C0531 putative nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (504 aa)    
Predicted Functional Partners:
Lcho_1460
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rfr:Rfer_3856 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.988
Lcho_1462
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
 
 
 
 0.987
Lcho_1458
TIGRFAM: hydrogenase maturation protease; KEGG: bxe:Bxe_C0532 hypothetical protein.
 
  
 0.954
Lcho_1461
PFAM: ferredoxin; KEGG: rfr:Rfer_3857 hydrogen dehydrogenase.
 
   
 0.866
Lcho_2449
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE.
 
   
 0.804
Lcho_2448
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: mpt:Mpe_A2812 HypD' protein; Belongs to the HypD family.
 
   
 0.799
Lcho_2446
KEGG: rme:Rmet_1284 hydrogenase maturation protein HypF.
 
   
 0.788
Lcho_2447
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: rme:Rmet_1283 hydrogenase assembly chaperone HypC/HupF.
 
   
 0.781
Lcho_2750
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mpt:Mpe_A3710 NAD-dependent formate dehydrogenase alpha subunit.
   
 
 0.780
Lcho_2445
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: rme:Rmet_1285 hydrogenase accessory protein HypB.
 
   
 0.692
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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