STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1470PFAM: peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32. (336 aa)    
Predicted Functional Partners:
Lcho_1471
PFAM: peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32.
 
 
 0.972
Lcho_1472
PFAM: Sterol-binding domain protein; KEGG: azo:azo0372 hypothetical protein.
 
  
 0.929
Lcho_1469
KEGG: azo:azo3088 putative nitric-oxide reductase subunit C.
 
    0.594
Lcho_1468
PFAM: cytochrome c oxidase subunit I; KEGG: azo:azo3089 putative nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
    0.592
Lcho_1482
PFAM: FMN-binding domain protein; KEGG: ajs:Ajs_1138 FMN-binding domain protein.
  
    0.499
Lcho_1467
PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: tbd:Tbd_0558 putative nitric oxide reductase activation protein NorQ.
  
    0.455
Lcho_1465
PFAM: von Willebrand factor type A; small acid-soluble spore P family protein; KEGG: dar:Daro_3197 von Willebrand factor, type A.
 
    0.441
Lcho_2771
KEGG: mpt:Mpe_A2470 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.439
Lcho_2925
TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: mpt:Mpe_A2936 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
 
    0.407
Lcho_1475
PFAM: NnrS family protein; KEGG: pna:Pnap_3970 NnrS family protein.
 
    0.401
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.