STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1484ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family. (369 aa)    
Predicted Functional Partners:
Lcho_1485
KEGG: mpt:Mpe_A1702 putative NnrS family.
  
    0.783
Lcho_1482
PFAM: FMN-binding domain protein; KEGG: ajs:Ajs_1138 FMN-binding domain protein.
 
  
 0.761
Lcho_1483
Nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; KEGG: ajs:Ajs_1139 nitrous-oxide reductase.
 
  
 0.696
Lcho_1486
PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A1701 hypothetical protein.
       0.628
Lcho_1487
KEGG: pol:Bpro_4726 hypothetical protein.
       0.589
Lcho_1479
PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_1135 ABC-2 type transporter.
 
   
 0.556
Lcho_1478
PFAM: NosL family protein; KEGG: ajs:Ajs_1134 NosL family protein.
 
   
 0.552
Lcho_1481
PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: ajs:Ajs_1137 periplasmic copper-binding.
 
   
 0.545
Lcho_2975
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
   
 0.452
Lcho_1480
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_1136 ABC transporter related.
 
     0.438
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.