STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1485KEGG: mpt:Mpe_A1702 putative NnrS family. (434 aa)    
Predicted Functional Partners:
Lcho_1484
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
    0.783
Lcho_1486
PFAM: protein of unknown function DUF59; KEGG: mpt:Mpe_A1701 hypothetical protein.
       0.656
Lcho_1487
KEGG: pol:Bpro_4726 hypothetical protein.
       0.620
Lcho_1138
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0497 oxidoreductase FAD/NAD(P)-binding.
  
  
 0.570
Lcho_1482
PFAM: FMN-binding domain protein; KEGG: ajs:Ajs_1138 FMN-binding domain protein.
  
  
 0.556
Lcho_1483
Nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; KEGG: ajs:Ajs_1139 nitrous-oxide reductase.
  
  
 0.527
Lcho_1468
PFAM: cytochrome c oxidase subunit I; KEGG: azo:azo3089 putative nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.471
Lcho_1466
KEGG: tbd:Tbd_0556 iron-sulfur cluster-binding protein.
 
    0.453
Lcho_3554
PFAM: Invasion gene expression up-regulator SirB; KEGG: pol:Bpro_4728 invasion gene expression up-regulator, SirB.
 
     0.445
Lcho_1465
PFAM: von Willebrand factor type A; small acid-soluble spore P family protein; KEGG: dar:Daro_3197 von Willebrand factor, type A.
 
    0.436
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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