STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1576KEGG: mpt:Mpe_A3735 cytochrome c-551 precursor. (133 aa)    
Predicted Functional Partners:
Lcho_1337
PFAM: cytochrome c class I; KEGG: rfr:Rfer_4077 cytochrome c, class I.
  
  
  0.952
Lcho_1488
PFAM: cytochrome c class I; KEGG: pol:Bpro_2050 cytochrome c, class I.
  
  
 
0.913
Lcho_2364
PFAM: Cache type 2 domain protein; KEGG: rpe:RPE_1803 cache, type 2.
     
  0.900
Lcho_3720
KEGG: pna:Pnap_3103 hypothetical protein.
  
     0.565
Lcho_4037
PFAM: Domain of unknown function DUF1854; KEGG: bpa:BPP3181 hypothetical protein.
  
     0.562
Lcho_1443
KEGG: ajs:Ajs_1911 hypothetical protein.
  
  
 0.552
Lcho_2368
TIGRFAM: peptidyl-prolyl cis-trans isomerase, EpsD family; KEGG: mpt:Mpe_A0738 hypothetical protein.
  
     0.544
Lcho_2324
PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_1502 protein of unknown function DUF1555.
  
     0.532
Lcho_1575
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: eba:ebA3794 complex two-component hybrid sensor component containing histidine kinase and response receiver domain.
       0.527
Lcho_0604
PFAM: Anti sigma-E protein RseA family protein; KEGG: mpt:Mpe_A0643 putative transmembrane sigma-E factor negative regulatory transcription regulator protein.
  
     0.520
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.