Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lcho_1578 | Lcho_1579 | Lcho_1578 | Lcho_1579 | TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE. | TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein. | 0.960 |
Lcho_1578 | queA | Lcho_1578 | Lcho_1577 | TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE. | S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.554 |
Lcho_1578 | recG | Lcho_1578 | Lcho_1580 | TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.559 |
Lcho_1579 | Lcho_1578 | Lcho_1579 | Lcho_1578 | TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein. | TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE. | 0.960 |
Lcho_1579 | queA | Lcho_1579 | Lcho_1577 | TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein. | S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.554 |
Lcho_1579 | recG | Lcho_1579 | Lcho_1580 | TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.569 |
queA | Lcho_1578 | Lcho_1577 | Lcho_1578 | S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE. | 0.554 |
queA | Lcho_1579 | Lcho_1577 | Lcho_1579 | S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein. | 0.554 |
queA | recG | Lcho_1577 | Lcho_1580 | S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.650 |
recG | Lcho_1578 | Lcho_1580 | Lcho_1578 | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: rfr:Rfer_3405 transcriptional regulator/antitoxin, MazE. | 0.559 |
recG | Lcho_1579 | Lcho_1580 | Lcho_1579 | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein. | 0.569 |
recG | queA | Lcho_1580 | Lcho_1577 | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | S-adenosylmethionine--tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.650 |