STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1581PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3529 transcriptional regulator, TetR family. (223 aa)    
Predicted Functional Partners:
Lcho_3265
KEGG: pna:Pnap_0301 hypothetical protein.
  
   
 0.634
Lcho_1582
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0826 putative ATP-binding ABC transporter protein.
     
 0.565
Lcho_1583
PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A0827 putative transmembrane protein.
       0.561
Lcho_1584
PFAM: BolA family protein; KEGG: mpt:Mpe_A0828 transcriptional regulator BolA superfamily-like protein; Belongs to the BolA/IbaG family.
       0.546
Lcho_3424
PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L.
  
     0.529
Lcho_2513
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
   
 0.501
Lcho_0265
KEGG: mpt:Mpe_A0595 hypothetical protein.
  
   
 0.496
Lcho_4280
KEGG: pna:Pnap_3987 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
  
     0.484
Lcho_3426
KEGG: mpt:Mpe_A3135 general secretion pathway protein N.
  
     0.470
Lcho_0489
PFAM: O-antigen polymerase; KEGG: mpt:Mpe_A0063 O-antigen polymerase.
  
     0.469
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.