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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1623PFAM: chemotaxis sensory transducer; KEGG: mpt:Mpe_A3082 methyl-accepting chemotaxis protein. (454 aa)    
Predicted Functional Partners:
Lcho_1533
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aha:AHA_1036 chemotaxis protein CheA.
 
 0.938
Lcho_0332
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: asa:ASA_3266 chemotaxis protein CheA.
 
 0.937
Lcho_1599
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: mpt:Mpe_A0585 chemotaxis protein histidine kinase.
 
 0.932
Lcho_1529
PFAM: CheW domain protein; KEGG: cvi:CV_1012 signal transduction chemotaxis protein.
 
 0.924
Lcho_3798
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0901 CheA signal transduction histidine kinases.
 
 0.923
Lcho_0334
PFAM: CheW domain protein; KEGG: psb:Psyr_0784 CheW-like protein.
 
 0.921
Lcho_3800
PFAM: CheW domain protein; KEGG: rfr:Rfer_0903 CheW protein.
 
 0.913
Lcho_1528
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
 0.898
Lcho_1524
PFAM: CheW domain protein; KEGG: mpt:Mpe_A0587 chemotaxis signal transduction protein.
 
 0.886
Lcho_1768
PFAM: CheW domain protein; KEGG: neu:NE1397 CheW-like domain.
 
 0.886
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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