STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1650KEGG: mpt:Mpe_A2133 hypothetical protein. (211 aa)    
Predicted Functional Partners:
Lcho_1651
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.757
Lcho_0261
PFAM: DSBA oxidoreductase; KEGG: aav:Aave_3987 DsbA oxidoreductase.
   
 
 0.748
Lcho_2508
KEGG: mpt:Mpe_A1948 hypothetical protein.
  
     0.741
Lcho_0599
KEGG: mpt:Mpe_A0649 hypothetical protein.
  
     0.701
Lcho_2355
KEGG: pol:Bpro_1568 hypothetical protein.
  
     0.663
Lcho_2060
KEGG: mpt:Mpe_A1619 putative transmembrane protein.
  
     0.652
Lcho_1679
KEGG: mpt:Mpe_A2160 putative transmembrane protein.
  
     0.650
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.645
Lcho_1827
KEGG: rfr:Rfer_1303 hypothetical protein.
 
     0.641
Lcho_3969
PFAM: CheW domain protein; KEGG: mpt:Mpe_A3188 twitching motility signal transduction protein.
  
     0.634
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.