STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1726PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1614 glycosyl transferase, group 1. (333 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.772
Lcho_1717
KEGG: aeh:Mlg_0907 hypothetical protein.
 
  
 0.697
Lcho_1725
PFAM: protein of unknown function DUF323; KEGG: pol:Bpro_1756 protein of unknown function DUF323.
 
     0.666
Lcho_0143
KEGG: dac:Daci_1741 conserved hypothetical secreted protein.
  
     0.646
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.593
Lcho_0141
PFAM: outer membrane efflux protein; KEGG: dac:Daci_1739 outer membrane efflux protein.
  
   
 0.574
Lcho_0142
KEGG: dac:Daci_1740 hypothetical protein.
  
     0.573
Lcho_4187
KEGG: pol:Bpro_0398 hypothetical protein.
  
     0.560
Lcho_3605
PFAM: aminotransferase class-III; KEGG: bbt:BBta_6209 putative glutamate-1-semialdehyde 2,1-aminomutase (GSA) (glutamate-1-semialdehyde aminotransferase); Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.543
Lcho_2319
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.489
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.