STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1758Type I secretion system ATPase; KEGG: bam:Bamb_3149 ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase. (779 aa)    
Predicted Functional Partners:
Lcho_1759
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3148 type I secretion membrane fusion protein, HlyD family.
 
 0.975
Lcho_2300
KEGG: reh:H16_B0690 ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
  
 
0.916
Lcho_2092
Type I secretion system ATPase; KEGG: mpt:Mpe_A1875 putative ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
  
  
 
0.912
Lcho_2093
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A1876 HlyD family secretion protein.
 
 0.895
Lcho_2301
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dvl:Dvul_1976 type I secretion membrane fusion protein, HlyD family.
 
 0.895
Lcho_1760
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_3587 type I secretion membrane fusion protein, HlyD family.
 
 0.875
Lcho_0747
TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; Na-Ca exchanger/integrin-beta4; KEGG: pfo:Pfl_1463 VCBS.
 
  
 0.843
Lcho_2097
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mpt:Mpe_A1880 outer membrane protein.
 
  
 0.818
Lcho_2299
PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6370 type I secretion outer membrane protein, TolC family.
 
  
 0.812
Lcho_2096
KEGG: mpt:Mpe_A1879 hypothetical protein.
 
  
 0.783
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.