STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1789KEGG: mpt:Mpe_A0480 cytochrome c550. (159 aa)    
Predicted Functional Partners:
Lcho_1788
KEGG: mpt:Mpe_A0481 periplasmic binding protein, putative.
 
     0.904
Lcho_1811
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative.
 
  
 0.850
Lcho_1794
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein.
 
   0.837
Lcho_3851
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein.
 
   0.837
Lcho_0851
PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1595 putative alcohol dehydrogenase.
 
  
 0.818
Lcho_0849
PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_2326 putative quinoprotein.
 
  
 0.793
Lcho_1825
KEGG: mpt:Mpe_A0471 hypothetical protein.
 
   
 0.786
Lcho_1795
KEGG: pna:Pnap_0722 hypothetical protein.
 
     0.773
Lcho_1824
PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A0472 hydrolase, putative.
 
     0.766
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.762
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.