STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1800KEGG: mpt:Mpe_A2594 hypothetical protein. (229 aa)    
Predicted Functional Partners:
Lcho_1801
PFAM: conserved hypothetical protein; KEGG: reh:H16_B1040 probable extra-cytoplasmic solute receptor.
       0.779
Lcho_1802
KEGG: pna:Pnap_3155 hypothetical protein.
       0.655
Lcho_1799
KEGG: mpt:Mpe_A2593 hypothetical protein.
       0.611
Lcho_1798
KEGG: mpt:Mpe_A2592 hypothetical protein.
       0.535
Lcho_1797
KEGG: mpt:Mpe_A2591 hypothetical protein.
       0.534
Lcho_1795
KEGG: pna:Pnap_0722 hypothetical protein.
       0.484
Lcho_1794
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein.
     
 0.478
Lcho_1796
PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A2590 efflux ABC transporter, permease protein.
       0.477
pqqB-2
Pyrroloquinoline quinone biosynthesis protein PqqB; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
       0.416
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.