STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1811TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A0473 quinoprotein ethanol dehydrogenase, putative. (582 aa)    
Predicted Functional Partners:
Lcho_0849
PFAM: Pyrrolo-quinoline quinone; KEGG: bbt:BBta_2326 putative quinoprotein.
  
  
 
0.926
Lcho_3255
TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1230 alcohol dehydrogenase, zinc-binding domain protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
    
 0.908
Lcho_0565
PFAM: Aldehyde Dehydrogenase_; KEGG: rsh:Rsph17029_2952 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.902
Lcho_0928
PFAM: Aldehyde Dehydrogenase_; KEGG: sil:SPO0097 aldehyde dehydrogenase family protein.
   
 
 0.902
Lcho_2104
PFAM: Aldehyde Dehydrogenase_; KEGG: pna:Pnap_3013 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
   
 
 0.902
Lcho_1789
KEGG: mpt:Mpe_A0480 cytochrome c550.
 
  
 0.850
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.802
pqqB
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.798
Lcho_1794
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein.
 
    0.786
Lcho_3851
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: vei:Veis_4977 40-residue YVTN family beta-propeller repeat protein.
 
    0.786
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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