STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1832PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ajs:Ajs_3752 major facilitator superfamily MFS_1. (574 aa)    
Predicted Functional Partners:
Lcho_1831
KEGG: amr:AM1_A0167 hypothetical protein.
       0.499
Lcho_2807
PFAM: ribosomal protein L31; KEGG: mpt:Mpe_A1281 putative ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.479
Lcho_1833
Hypothetical protein; KEGG: mgm:Mmc1_0996 chromosome segregation ATPases-like protein.
       0.459
dctA
Sodium:dicarboxylate symporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
  
 0.445
Lcho_2113
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: aav:Aave_4731 riboflavin synthase, alpha subunit.
   
    0.429
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.