STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1840Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (212 aa)    
Predicted Functional Partners:
Lcho_1839
PFAM: BolA family protein; KEGG: bur:Bcep18194_A5212 BolA-like protein; Belongs to the BolA/IbaG family.
 
    0.854
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mpt:Mpe_A1767 methionine-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.671
selO
Protein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.593
Lcho_1838
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mpt:Mpe_A1764 putative exported isomerase.
       0.548
Lcho_2523
PFAM: import inner membrane translocase subunit Tim44; KEGG: mpt:Mpe_A2192 hypothetical protein.
  
    0.538
thrB
KEGG: mpt:Mpe_A1146 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; Belongs to the pseudomonas-type ThrB family.
  
     0.469
Lcho_2556
PFAM: protein of unknown function DUF343; KEGG: mpt:Mpe_A2486 hypothetical protein; Belongs to the UPF0434 family.
  
     0.449
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.