STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selOProtein of unknown function UPF0061; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (503 aa)    
Predicted Functional Partners:
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mpt:Mpe_A1767 methionine-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
  
  
 0.835
Lcho_1839
PFAM: BolA family protein; KEGG: bur:Bcep18194_A5212 BolA-like protein; Belongs to the BolA/IbaG family.
       0.593
Lcho_1840
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.593
Lcho_1843
PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A1769 acyl-CoA synthetase.
       0.534
Lcho_2663
PFAM: transport system permease protein; KEGG: mpt:Mpe_A2306 iron(III) dicitrate-binding protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
      0.516
Lcho_1838
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mpt:Mpe_A1764 putative exported isomerase.
   
   0.431
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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