STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1855PFAM: thioesterase superfamily protein; KEGG: mpt:Mpe_A1780 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Lcho_1856
PFAM: GCN5-related N-acetyltransferase; KEGG: aav:Aave_2870 GCN5-related N-acetyltransferase.
     
 0.671
Lcho_1854
PFAM: transglutaminase domain protein; KEGG: dar:Daro_0510 transglutaminase-like.
       0.623
Lcho_3914
KEGG: mpt:Mpe_A0205 hypothetical protein.
  
     0.533
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.483
Lcho_1851
PFAM: inner-membrane translocator; KEGG: pol:Bpro_2576 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.478
Lcho_2808
KEGG: mpt:Mpe_A1280 hypothetical protein.
  
     0.448
Lcho_0184
PFAM: protein of unknown function DUF1239; KEGG: mpt:Mpe_A3807 putative transmembrane protein.
  
     0.444
Lcho_3533
KEGG: mpt:Mpe_A0190 putative ATP synthase protein I AtpI.
 
     0.443
Lcho_4387
Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.436
Lcho_4202
PFAM: thioesterase superfamily protein; KEGG: dac:Daci_5992 thioesterase superfamily protein.
  
     0.430
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.