STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1868KEGG: art:Arth_1252 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Lcho_1871
PFAM: Patatin; KEGG: art:Arth_1250 patatin.
 
   
 0.948
Lcho_1869
KEGG: art:Arth_1251 hypothetical protein.
       0.805
Lcho_1870
Hypothetical protein.
       0.803
Lcho_3188
KEGG: mxa:MXAN_4939 hypothetical protein.
 
     0.785
Lcho_3189
KEGG: mxa:MXAN_4941 hypothetical protein.
 
   
 0.780
Lcho_1872
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: mpt:Mpe_A1799 putative esterase/lipase.
       0.613
Lcho_1873
PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: mpt:Mpe_A1800 thioesterase-like protein.
       0.613
Lcho_1867
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mpt:Mpe_A3149 sensor histidine kinase.
       0.485
Lcho_3190
KEGG: reh:H16_A1654 hypothetical membrane spanning protein.
 
     0.472
Lcho_3044
KEGG: mxa:MXAN_4502 hypothetical protein.
  
     0.454
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.