STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1939PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_37730 putative TonB dependent receptor. (854 aa)    
Predicted Functional Partners:
Lcho_1935
KEGG: mpt:Mpe_A1758 hypothetical protein.
 
 
 0.830
Lcho_1938
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein.
 
  
 0.779
Lcho_0808
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_1901 TonB-dependent receptor.
 
   
 0.758
Lcho_2646
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo1830 putative TonB-denpendent receptor.
  
   
 0.758
Lcho_3235
TIGRFAM: TonB family protein; KEGG: azo:azo2329 periplasmic biopolymer transport protein linking inner and outer membranes.
 
 
 0.700
Lcho_1937
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: azo:azo0233 putative biopolymer transport protein ExbD.
 
  
 0.693
Lcho_1936
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mms:mma_0247 biopolymer transport protein ExbD.
 
  
 0.677
Lcho_0815
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mag:amb3549 periplasmic protein TonB, links inner and outer membranes.
 
 
 0.674
Lcho_3402
KEGG: dac:Daci_5576 hypothetical protein.
  
 
 
 0.618
Lcho_3158
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein.
 
    0.525
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.