STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1981PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_2987 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa)    
Predicted Functional Partners:
Lcho_0824
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pde:Pden_0196 short-chain dehydrogenase/reductase SDR.
 
    0.671
Lcho_1980
KEGG: pol:Bpro_3522 hypothetical protein.
       0.533
Lcho_1226
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpt:Mpe_A3053 oxidoreductase.
 
    0.444
Lcho_0972
KEGG: ret:RHE_CH02994 hypothetical protein.
  
    0.401
Lcho_1382
PFAM: glycosyl transferase family 8; KEGG: lsa:LSA1474 putative bifunctional glycosyl transferase, family 8.
  
    0.401
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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