STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1986KEGG: sfu:Sfum_0602 hypothetical protein. (299 aa)    
Predicted Functional Partners:
Lcho_0931
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.675
Lcho_0810
KEGG: nar:Saro_1725 hypothetical protein.
  
     0.653
Lcho_2778
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: mpt:Mpe_A2477 putative cytochrome-c oxidase, subunit II.
  
 
 0.648
Lcho_2779
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: mpt:Mpe_A2478 putative cytochrome c oxidase (subunit I) transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.641
Lcho_0930
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.625
Lcho_3552
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.625
Lcho_0251
PFAM: cytochrome c oxidase subunit III; KEGG: pol:Bpro_0729 cytochrome c oxidase, subunit III.
  
 
 0.583
Lcho_0252
PFAM: cytochrome c oxidase subunit III; KEGG: pol:Bpro_0728 cytochrome c oxidase subunit III.
  
 
 0.583
Lcho_3823
PFAM: cytochrome c oxidase subunit III; KEGG: mpt:Mpe_A3177 putative cytochrome c oxidase subunit III transmembrane protein.
  
 
 0.583
Lcho_1988
Isoquinoline 1-oxidoreductase; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: gme:Gmet_0837 twin-arginine translocation pathway signal.
     
 0.526
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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