STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1987PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc0626 probable aldehyde dehydrogenase (subunit III) oxidoreductase protein. (155 aa)    
Predicted Functional Partners:
Lcho_1988
Isoquinoline 1-oxidoreductase; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: gme:Gmet_0837 twin-arginine translocation pathway signal.
 
 0.989
Lcho_3461
KEGG: mpt:Mpe_A0798 xanthine dehydrogenase; TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
 
     0.949
Lcho_0067
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bja:bll2736 putative aldehyde dehydrogenase protein.
 
 0.947
Lcho_4305
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: rle:RL2500 putative isoquinoline 1-oxidoreductase beta subunit.
 
 0.947
Lcho_4304
PFAM: protein of unknown function DUF182; KEGG: aav:Aave_3933 protein of unknown function DUF182.
 
  
 0.808
Lcho_1558
PFAM: protein of unknown function DUF182; KEGG: rso:RSc1463 hypothetical protein.
 
  
 0.806
Lcho_2921
KEGG: mpt:Mpe_A2928 hypothetical protein.
 
  
 0.777
Lcho_3669
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: eba:ebA1378 salicylate hydroxylase.
  
  
 0.644
Lcho_2474
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: mag:amb3335 predicted ferric reductase.
   
    0.589
Lcho_1084
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: mpt:Mpe_A0697 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein.
   
    0.574
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: very high (>100%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.