STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1989PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pna:Pnap_1622 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding. (332 aa)    
Predicted Functional Partners:
Lcho_1132
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: azo:azo1162 probable hydroxypyruvate reductase.
 
 0.939
Lcho_3177
Hydroxypyruvate reductase; PFAM: MOFRL domain protein; KEGG: azo:azo1162 probable hydroxypyruvate reductase.
 
 0.939
Lcho_4179
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0213 putative 2-hydroxyacid dehydrogenase in PhoH-CsgG intergenic region.
 
  
0.921
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.919
Lcho_1170
PFAM: FAD linked oxidase domain protein; biotin/lipoate A/B protein ligase; KEGG: mpt:Mpe_A3638 putative glycolate oxidase (FAD-linked subunit) oxidoreductase protein.
   
 0.914
Lcho_1171
PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase.
   
 0.914
Lcho_3259
PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase.
   
 0.914
Lcho_3260
PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0425 FAD linked oxidase domain protein.
   
 0.914
Lcho_1121
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
  
 
0.913
Lcho_1744
TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: ajs:Ajs_2401 isocitrate lyase.
     
 0.912
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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