STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_1995PFAM: electron transport protein SCO1/SenC; KEGG: dac:Daci_1998 electron transport protein SCO1/SenC. (197 aa)    
Predicted Functional Partners:
Lcho_1994
PFAM: protein of unknown function DUF461; KEGG: dac:Daci_2890 protein of unknown function DUF461.
 
   
 0.927
Lcho_1996
PFAM: protein of unknown function DUF461; KEGG: dac:Daci_2688 protein of unknown function DUF461.
 
   
 0.878
Lcho_3818
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.694
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
 0.612
Lcho_3821
PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: mpt:Mpe_A3179 cytochrome c oxidase assembly protein.
 
 
 0.584
Lcho_3550
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tbd:Tbd_2789 probable thiol:disulfide interchange protein.
 
   0.583
Lcho_0932
PFAM: cytochrome c1; KEGG: mpt:Mpe_A0851 cytochrome c1 precursor.
  
   
 0.567
Lcho_3827
PFAM: cytochrome oxidase assembly; KEGG: mpt:Mpe_A3174 putative heme O oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
 
 0.566
Lcho_3984
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A3204 thioredoxin family protein, putative.
 
   0.539
Lcho_0930
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.501
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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