STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2004TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A2326 GGDEF domain containing protein. (304 aa)    
Predicted Functional Partners:
Lcho_0342
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aav:Aave_0649 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
 
  
 0.814
Lcho_1231
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS01894 hypothetical protein.
  
   0.797
Lcho_2765
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: bja:bll1362 hypothetical protein.
 
  
 0.775
Lcho_3310
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rle:pRL120541 putative transmembrane GGDEF/EAL domain protein.
  
     0.766
Lcho_1539
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: vei:Veis_4873 diguanylate cyclase with PAS/PAC sensor.
  
     0.764
Lcho_3903
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: acr:Acry_0567 diguanylate cyclase.
  
     0.764
Lcho_2095
Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mpt:Mpe_A1878 hypothetical protein.
 
  
 0.763
Lcho_1730
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pau:PA14_50060 hypothetical protein.
  
     0.762
Lcho_0699
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A2699 GGDEF domain containing protein.
  
     0.761
Lcho_1063
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_2544 diguanylate cyclase.
  
     0.761
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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