STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2016KEGG: mpt:Mpe_A1552 hypothetical protein. (94 aa)    
Predicted Functional Partners:
Lcho_2015
Quinolinate synthetase complex, A subunit; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
 
     0.645
Lcho_0751
KEGG: mpt:Mpe_A1948 hypothetical protein.
  
     0.641
Lcho_2008
Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; KEGG: har:HEAR2840 hypothetical protein.
 
     0.604
Lcho_0661
KEGG: lma:LmjF35.0290 hypothetical protein, conserved.
  
     0.565
Lcho_2573
KEGG: rfr:Rfer_1228 hypothetical protein.
  
     0.559
Lcho_2722
KEGG: mpt:Mpe_A2861 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
     0.547
Lcho_3336
KEGG: dar:Daro_2990 hypothetical protein.
  
     0.527
Lcho_2013
KEGG: mpt:Mpe_A1550 hypothetical protein.
 
     0.510
Lcho_1025
PFAM: flagellar biosynthesis protein FliO; KEGG: mpt:Mpe_A0574 flagellar biogenesis protein.
  
     0.487
Lcho_3094
KEGG: pca:Pcar_0383 MshA biogenesis protein, MshJ-like.
  
     0.473
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.