STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2045PFAM: transcriptional coactivator/pterin dehydratase; KEGG: sal:Sala_1825 transcriptional coactivator/pterin dehydratase. (107 aa)    
Predicted Functional Partners:
Lcho_2046
TIGRFAM: phenylalanine-4-hydroxylase; PFAM: aromatic amino acid hydroxylase; KEGG: pol:Bpro_0168 phenylalanine 4-monooxygenase.
 
 0.993
Lcho_0180
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: bxe:Bxe_B2429 putative pterin-4-alpha-carbinolamine dehydratase (PcbD).
  
  
 
0.904
Lcho_2042
KEGG: ppu:PP_3433 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.879
Lcho_2044
Fumarylacetoacetase; KEGG: pol:Bpro_2996 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
  
  
 0.850
Lcho_2043
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pna:Pnap_1119 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.776
Lcho_2047
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_0167 short-chain dehydrogenase/reductase SDR.
       0.747
Lcho_2041
PFAM: Glu/Leu/Phe/Val dehydrogenase; KEGG: rha:RHA1_ro03043 glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
 
     0.684
Lcho_4302
KEGG: pol:Bpro_2997 homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase.
  
  
 0.505
Lcho_2040
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_1209 ABC transporter-related protein.
 
     0.502
Lcho_0434
KEGG: pna:Pnap_1120 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.489
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.