STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2060KEGG: mpt:Mpe_A1619 putative transmembrane protein. (181 aa)    
Predicted Functional Partners:
Lcho_3582
KEGG: mpt:Mpe_A2075 conserved hypothetical signal peptide protein.
  
     0.771
Lcho_3969
PFAM: CheW domain protein; KEGG: mpt:Mpe_A3188 twitching motility signal transduction protein.
  
     0.759
Lcho_3836
KEGG: mpt:Mpe_A3388 hypothetical protein.
  
     0.754
Lcho_0599
KEGG: mpt:Mpe_A0649 hypothetical protein.
  
     0.746
Lcho_3493
KEGG: mpt:Mpe_A3234 hypothetical protein.
  
     0.744
Lcho_4234
PFAM: VanZ family protein; KEGG: mpt:Mpe_A0308 hypothetical protein.
  
     0.739
Lcho_3967
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_0905 CheA signal transduction histidine kinase.
  
     0.732
Lcho_2870
KEGG: mpt:Mpe_A1998 uncharacterized protein involved in fimbrial biogenesis; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
     0.721
Lcho_0346
KEGG: mpt:Mpe_A0279 hypothetical protein.
  
    0.715
Lcho_2508
KEGG: mpt:Mpe_A1948 hypothetical protein.
  
     0.706
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.