STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2065PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_3014 thioesterase superfamily. (147 aa)    
Predicted Functional Partners:
Lcho_4031
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0417 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase.
 
 
 0.700
Lcho_2067
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A1448 short chain dehydrogenase.
   
 
 0.699
Lcho_2066
PFAM: protein of unknown function DUF480; KEGG: bmu:Bmul_3231 protein of unknown function DUF480; Belongs to the UPF0502 family.
       0.672
Lcho_2684
PFAM: NAD-glutamate dehydrogenase; KEGG: pol:Bpro_3020 NAD-glutamate dehydrogenase.
 
    0.517
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.511
Lcho_0073
PFAM: Acyl transferase; KEGG: dac:Daci_1762 (acyl-carrier protein) S-malonyltransferase.
  
 
 0.508
Lcho_0610
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mpt:Mpe_A0637 putative malonyl CoA-(acyl-carrier-protein) transacylase.
  
 
 0.508
Lcho_4211
KEGG: eba:ebA226 hypothetical protein.
  
     0.445
Lcho_2068
KEGG: pmy:Pmen_4512 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.427
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.