Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lcho_1630 | Lcho_2089 | Lcho_1630 | Lcho_2089 | Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.784 |
Lcho_2089 | Lcho_1630 | Lcho_2089 | Lcho_1630 | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.784 |
Lcho_2089 | Lcho_2090 | Lcho_2089 | Lcho_2090 | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1872 putative glutathione-S-transferase. | 0.811 |
Lcho_2089 | Lcho_2091 | Lcho_2089 | Lcho_2091 | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1874 hypothetical protein. | 0.608 |
Lcho_2089 | gcvP | Lcho_2089 | Lcho_1559 | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.426 |
Lcho_2089 | hisD | Lcho_2089 | Lcho_1587 | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.405 |
Lcho_2090 | Lcho_2089 | Lcho_2090 | Lcho_2089 | TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1872 putative glutathione-S-transferase. | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.811 |
Lcho_2090 | Lcho_2091 | Lcho_2090 | Lcho_2091 | TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1872 putative glutathione-S-transferase. | PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1874 hypothetical protein. | 0.585 |
Lcho_2091 | Lcho_2089 | Lcho_2091 | Lcho_2089 | PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1874 hypothetical protein. | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.608 |
Lcho_2091 | Lcho_2090 | Lcho_2091 | Lcho_2090 | PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1874 hypothetical protein. | TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1872 putative glutathione-S-transferase. | 0.585 |
gcvP | Lcho_2089 | Lcho_1559 | Lcho_2089 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.426 |
hisD | Lcho_2089 | Lcho_1587 | Lcho_2089 | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family. | 0.405 |