STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2091PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1874 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Lcho_2089
PFAM: protein of unknown function DUF152; KEGG: mpt:Mpe_A1871 hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.608
Lcho_2090
TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: mpt:Mpe_A1872 putative glutathione-S-transferase.
       0.585
Lcho_2093
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A1876 HlyD family secretion protein.
       0.517
Lcho_2092
Type I secretion system ATPase; KEGG: mpt:Mpe_A1875 putative ABC transporter; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase.
       0.516
Lcho_0685
PFAM: NUDIX hydrolase; KEGG: mpt:Mpe_A1108 hypothetical protein.
 
  
 0.460
Lcho_2965
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: mpt:Mpe_A2217 putative peptidase, M24 family protein.
 
   
 0.447
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.446
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.