STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2122PFAM: acyltransferase 3; KEGG: reu:Reut_B3984 acyltransferase 3. (367 aa)    
Predicted Functional Partners:
Lcho_2124
PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: azo:azo3853 hypothetical protein.
 
     0.785
Lcho_2123
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mpt:Mpe_A2968 5-oxoprolinase (ATP-hydrolyzing).
       0.773
Lcho_2125
KEGG: yli:YALI0B14795g hypothetical protein.
       0.727
Lcho_4037
PFAM: Domain of unknown function DUF1854; KEGG: bpa:BPP3181 hypothetical protein.
  
     0.718
Lcho_0099
KEGG: mpt:Mpe_A0556 putative lipoprotein.
  
     0.709
Lcho_4038
ABC transporter-related protein; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A1021 putative ABC transporter.
 
     0.696
Lcho_3730
KEGG: mpt:Mpe_A1164 hypothetical protein.
  
     0.693
Lcho_4040
TIGRFAM: cyanophycin synthetase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A1023 cyanphycin synthetase; Belongs to the MurCDEF family.
 
  
 0.652
Lcho_4234
PFAM: VanZ family protein; KEGG: mpt:Mpe_A0308 hypothetical protein.
 
     0.635
Lcho_4039
KEGG: mpt:Mpe_A1022 cyanophycin synthetase; TIGRFAM: cyanophycin synthetase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp.
 
  
 0.615
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.