STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2143Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rfr:Rfer_2438 transcriptional regulator, LysR family. (321 aa)    
Predicted Functional Partners:
Lcho_2144
PFAM: Carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase.
 
  
 0.701
Lcho_4269
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dac:Daci_0733 transcriptional regulator, LysR family.
  
     0.694
Lcho_4296
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1765 transcriptional regulator, LysR family.
  
     0.688
Lcho_0403
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1453 transcriptional regulator, LysR family.
  
     0.675
Lcho_0112
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3294 LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
     0.632
Lcho_3345
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A2279 LysR family transcriptional regulatory protein.
  
     0.596
Lcho_2459
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_0756 transcriptional regulator, LysR family.
  
     0.575
Lcho_0720
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfl:PFL_2331 transcriptional regulator, LysR family.
  
     0.574
Lcho_0160
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2188 transcriptional regulator, LysR-family.
  
     0.569
Lcho_3631
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rpd:RPD_0989 LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.568
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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