STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2158PFAM: Disulphide bond formation protein DsbB; KEGG: psa:PST_0576 disulfide bond formation protein; Belongs to the DsbB family. (150 aa)    
Predicted Functional Partners:
Lcho_2159
KEGG: rfr:Rfer_0414 DsbA oxidoreductase.
 
 
 0.972
Lcho_2157
PFAM: cation efflux protein; KEGG: mpt:Mpe_A1655 hypothetical protein.
 
     0.833
Lcho_2153
PFAM: extracellular solute-binding protein family 1; KEGG: rsq:Rsph17025_1446 ABC-type uncharacterized transport system periplasmic component-like protein.
       0.580
Lcho_2154
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsh:Rsph17029_1833 ABC transporter, fused inner membrane subunits.
       0.580
Lcho_2155
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsh:Rsph17029_1834 ABC transporter related.
       0.580
Lcho_2156
PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1135 major facilitator superfamily MFS_1.
       0.580
Lcho_0267
Putative thiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
 
 0.493
Lcho_4228
PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A0151 thiol:disulfide interchange protein.
  
 
 0.473
Lcho_2151
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding.
       0.463
Lcho_2152
Glutamate synthase (NADH); PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rfr:Rfer_2184 putative glutamate synthase (NADPH) small subunit.
       0.446
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.