STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2163PFAM: protein of unknown function DUF1329; KEGG: psa:PST_0616 hypothetical protein. (449 aa)    
Predicted Functional Partners:
Lcho_2162
PFAM: protein of unknown function DUF1302; KEGG: gme:Gmet_2248 hypothetical protein.
 
  
 0.988
Lcho_2164
KEGG: psa:PST_0617 glycosyl hydrolase.
 
  
 0.957
Lcho_2165
KEGG: psa:PST_0618 transporter, putative.
 
  
 0.913
Lcho_4267
PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2068 hypothetical protein.
   
 
 0.632
Lcho_1129
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: mpt:Mpe_A2027 N-acetylmuramoyl-L-alanine amidase.
    
   0.627
Lcho_2741
PFAM: protein of unknown function DUF962; KEGG: psb:Psyr_0242 protein of unknown function DUF962.
  
     0.589
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
       0.501
Lcho_2166
PFAM: Rieske [2Fe-2S] domain protein; KEGG: ppf:Pput_2672 Rieske (2Fe-2S) domain protein.
       0.499
Lcho_2440
KEGG: mpt:Mpe_A3522 hypothetical protein.
  
  
 0.463
Lcho_1282
PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2047 ABC transporter, permease protein.
   
 
 0.458
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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