STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2164KEGG: psa:PST_0617 glycosyl hydrolase. (368 aa)    
Predicted Functional Partners:
Lcho_2163
PFAM: protein of unknown function DUF1329; KEGG: psa:PST_0616 hypothetical protein.
 
  
 0.957
Lcho_2162
PFAM: protein of unknown function DUF1302; KEGG: gme:Gmet_2248 hypothetical protein.
 
    0.951
Lcho_2165
KEGG: psa:PST_0618 transporter, putative.
 
  
 0.942
Lcho_2166
PFAM: Rieske [2Fe-2S] domain protein; KEGG: ppf:Pput_2672 Rieske (2Fe-2S) domain protein.
       0.568
Lcho_1982
KEGG: dar:Daro_1045 hypothetical protein.
 
    0.512
Lcho_0687
PFAM: protein of unknown function DUF599; KEGG: mpt:Mpe_A2884 hypothetical protein.
  
     0.485
Lcho_0142
KEGG: dac:Daci_1740 hypothetical protein.
  
     0.439
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family.
       0.429
Lcho_2741
PFAM: protein of unknown function DUF962; KEGG: psb:Psyr_0242 protein of unknown function DUF962.
  
     0.428
Lcho_0143
KEGG: dac:Daci_1741 conserved hypothetical secreted protein.
  
     0.419
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.