STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2172PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_0776 major facilitator superfamily MFS_1. (452 aa)    
Predicted Functional Partners:
Lcho_2174
PFAM: protein of unknown function DUF849; KEGG: reh:H16_B2526 hypothetical protein.
 
    0.806
Lcho_2173
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dac:Daci_2009 alcohol dehydrogenase zinc-binding domain protein.
  
    0.751
Lcho_2175
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reu:Reut_A2147 taurine dioxygenase.
 
     0.700
Lcho_2170
PFAM: conserved hypothetical protein; KEGG: reu:Reut_B4540 conserved hypothetical protein 698.
 
    0.643
Lcho_2176
ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: bps:BPSS2291 GerE family regulatory protein.
 
     0.562
Lcho_2171
PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_5305 acyl-CoA synthetase.
       0.527
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.