STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2177PFAM: SCP-like extracellular; SMART: Allergen V5/Tpx-1 family protein; KEGG: nve:NEMVE_v1g233975 predicted protein Pfam: SCP PROSITE: CRISP_1. (259 aa)    
Predicted Functional Partners:
Lcho_2176
ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: regulatory protein LuxR; KEGG: bps:BPSS2291 GerE family regulatory protein.
       0.506
orn
Exonuclease RNase T and DNA polymerase III; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
 
    0.461
Lcho_1754
KEGG: mag:amb3790 large exoprotein involved in heme utilization or adhesion.
  
    0.422
Lcho_2308
PFAM: protein of unknown function DUF637 hemagglutinin putative; KEGG: nma:NMA0690 hypothetical protein.
  
    0.422
Lcho_3430
KEGG: pin:Ping_2394 filamentous haemagglutinin family outer membrane protein; TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Ig family protein; filamentous haemagglutinin domain protein; SMART: Dystroglycan-type cadherin domain protein.
  
    0.422
Lcho_4093
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: xac:XAC4113 YapH protein.
  
    0.422
Lcho_2249
KEGG: pol:Bpro_3782 hypothetical protein.
   
    0.400
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.