STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2200PFAM: integrase family protein; KEGG: vei:Veis_2767 phage integrase family protein; Belongs to the 'phage' integrase family. (415 aa)    
Predicted Functional Partners:
Lcho_2198
Hypothetical protein.
       0.773
Lcho_2199
Hypothetical protein.
       0.773
Lcho_0882
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: hha:Hhal_1156 phage transcriptional regulator, AlpA.
 
  
 0.657
Lcho_3477
PFAM: protein of unknown function DUF927; KEGG: lpc:LPC_2195 inner membrane protein.
 
  
 0.598
Lcho_0897
PFAM: integrase family protein; KEGG: dar:Daro_2526 phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.559
Lcho_2983
KEGG: pna:Pnap_0964 hypothetical protein.
 
     0.544
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.