STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2201KEGG: ppu:PP_3397 hypothetical protein. (467 aa)    
Predicted Functional Partners:
Lcho_2202
PFAM: Fibronectin type III domain protein; KEGG: pen:PSEEN2822 hypothetical protein.
 
    
0.780
Lcho_3893
KEGG: pfo:Pfl_1975 hypothetical protein.
  
     0.772
Lcho_0649
PFAM: multicopper oxidase type 2; KEGG: ppf:Pput_2532 multicopper oxidase, type 2.
  
     0.763
Lcho_2591
PFAM: multicopper oxidase type 2; KEGG: pen:PSEEN2124 hypothetical protein.
  
     0.763
Lcho_3892
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1 heme region; KEGG: pfo:Pfl_1976 hypothetical protein.
  
     0.760
Lcho_2625
KEGG: neu:NE0315 possible multicopper oxidase.
  
     0.756
Lcho_3666
KEGG: neu:NE0315 possible multicopper oxidase.
  
     0.755
Lcho_0650
PFAM: cytochrome c class I; electron transport protein SCO1/SenC; KEGG: pfo:Pfl_2002 electron transport protein SCO1/SenC.
 
     0.754
Lcho_2628
KEGG: pfo:Pfl_1979 cytochrome c, putative.
  
     0.751
Lcho_3889
PFAM: Extracellular ligand-binding receptor; KEGG: pfo:Pfl_1979 cytochrome c, putative.
  
     0.698
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.